OMArk is a software to assess the quality of gene repertoire annotated from a genomic sequence - also called proteome. It relies on comparisons to the predicted ancestral gene repertoire of the target species and to the extant gene repertoire of close species to:

  • Estimate the completeness of the gene-repertoire by comparison to conserved orthologous groups.
  • Estimate the proportion of accurate and erroneous gene models in the proteome.
  • Detect possible contamination from other species in the proteome.
The software is available as a command-line tool on GitHub or can be executed from this webserver.

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